PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05515
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 430aa    MW: 47107.1 Da    PI: 6.9165
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05515genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.3e-1097122127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC+ f++ GtC+y  +C+FaHg+
  PEQU_05515  97 FKTKLCCKFRA-GTCPYVTNCNFAHGM 122
                 69*********.*************95 PP

2zf-CCCH22.52e-07169194126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 yk ++C+ f+    C+yGd+C+F H+
  PEQU_05515 169 YKGRNCKKFYTEEGCPYGDTCTFLHD 194
                 899**********************7 PP

3zf-CCCH43.17.1e-14229254126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G++C+FaHg
  PEQU_05515 229 WKTRICNKWEMTGYCPFGSKCHFAHG 254
                 8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.58E-894127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-1495129IPR000571Zinc finger, CCCH-type
SMARTSM003560.001496122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.94396123IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-797122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-7167195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.943168196IPR000571Zinc finger, CCCH-type
SMARTSM003560.012168195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-9168198IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-5169194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-17224258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-10225259IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422228256IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-11229254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDYGGRSDSV IEIIPDASAI CSEPIPSSLD QSIWATEDDY RAWNGDSSMD SFSNQTNDGR  60
QPHSRAGSEQ PHIKKPRISL QGDSGAGKSK ALGKMFFKTK LCCKFRAGTC PYVTNCNFAH  120
GMDELRKPPP NWQEIVAALE DGSFVEPREE HQIPILTTSS VVGEGQRSYK GRNCKKFYTE  180
EGCPYGDTCT FLHDELKPRE SVAISLSPTV GGGGYGGGGN GMNQKPSNWK TRICNKWEMT  240
GYCPFGSKCH FAHGAAELHR YGGGLVEMEA RDSSATGMDL KQASAATKTV TDVVAASSIS  300
IPHGEVYHVG VPAQRSTMAN QRQIQRPVQN WKGPDKISRI YGDWIDENDI FQQICIDACP  360
AWEDKSKMKE AMKTGKQLTS DDLAIVGVSL KFLSVLGLDC IVISLETAHL YLTKPAMAFE  420
LRSPMKHATT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010935018.11e-171PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-135C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLF2EAY21e-152F2EAY2_HORVD; Predicted protein
STRINGBRADI3G16377.11e-148(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-105C3H family protein